At the 3:38 time-stamp on the YouTube upload, there are 2 orbs on a table at the right of the shot that only show up in that shot. Since this is part of the old deleted file, removing the orbs would've required to either recreate the first part or use some post production tools.
In his director's commentary, Joel reveals that at 12:25, he was supposed to say "Poop Joke" but instead he said "Fart Joke".